PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15726g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 205aa    MW: 23856.5 Da    PI: 10.0616
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15726g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33311302103
                               HHHHHHHHHC.......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
              HSF_DNA-bind   2 Flkklyeile.......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                               Fl k+ye+le        +  ++++sw+e+g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++         w
  Niben101Ctg15726g00001.1  31 FLLKTYELLEveeeeenYSGKNKVVSWNEEGTGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------W 106
                               99********7665443337899*************************************************999.........* PP

                               EEEESXXXXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  80 eFkhksFkkgkkellekikrkkse 103
                               eF+h++Fkkg+k+ll ki rkks+
  Niben101Ctg15726g00001.1 107 EFSHEKFKKGSKHLLAKITRKKSD 130
                               *********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3524121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-4227127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.07E-2728127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-2931127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-113861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-117688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1189101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATAAVGTAE YRTISWKIGQ PPTRTKCPAP FLLKTYELLE VEEEEENYSG KNKVVSWNEE  60
GTGFVVWSPA EFSELMLPKY FKHNNFSSFI RQLNTYGFKK VASKRWEFSH EKFKKGSKHL  120
LAKITRKKSD PSAFPAYLKP SDQILAAKEG NNISLQLLME ENRNLRKERL ELEMQIAHFK  180
TLETKLMDCL SKYVGNQHNK IRRLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A5e-17251272106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A5e-17251272106HEAT-SHOCK TRANSCRIPTION FACTOR
5d8k_B5e-17271292107Heat shock factor protein 2
5d8l_B5e-17271292107Heat shock factor protein 2
5d8l_D5e-17271292107Heat shock factor protein 2
5d8l_F5e-17271292107Heat shock factor protein 2
5d8l_H5e-17271292107Heat shock factor protein 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804280.11e-135PREDICTED: heat stress transcription factor B-2a-like
TrEMBLK4B9581e-94K4B958_SOLLC; Uncharacterized protein
STRINGSolyc02g078340.2.14e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-36heat shock transcription factor B2A